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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
97
total RNA-seq
29
ATAC-seq
10
DNase-seq
10
WGBS
6
single cell RNA-seq
3
RRBS
2
FAIRE-seq
Assay category
103
Transcription
41
DNA accessibility
13
DNA methylation
Date released
100
August, 2017
24
May, 2022
16
November, 2018
8
October, 2017
6
April, 2018
2
July, 2018
1
March, 2019
Available data
1136
bam
1114
bigWig
1069
tsv
345
bed narrowPeak
157
fastq
157
txt
148
bigBed narrowPeak
142
bed broadPeak
141
bed bed3+
140
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
157
Homo sapiens
Biosample type
315
primary cell
157
tissue
21
in vitro differentiated cells
7
cell line
1
stem cell
Organ
136
pancreas
6
adipose tissue
6
connective tissue
6
liver
4
spleen
3
brain
2
musculature of body
Project
157
AMP
Genome assembly (visualization)
139
hg19
125
GRCh38
Lab
131
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
assay_title!
ChIP-seq
whole genome sequencing assay
organ_slims!
limb
BIOSAMPLE
ASSAY
157 results
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total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
97
20
1
6
1
body of pancreas
4
2
2
liver
2
1
1
spleen
1
1
2
adipose tissue
3
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