Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
30
total RNA-seq
20
ATAC-seq
4
Hi-C
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
31
Transcription
21
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
40
May, 2022
13
August, 2021
5
August, 2017
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
May, 2020
Available data
21
bigWig
20
bed narrowPeak
12
tsv
3
fastq
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
1
hdf5
1
vcf
Organism
68
Homo sapiens
Biosample type
50
tissue
16
cell line
2
primary cell
Organ
250
pancreas
198
epithelium
136
kidney
106
heart
93
bone element
68
liver
52
eye
39
connective tissue
22
brain
20
lung
18
vasculature
17
blood vessel
17
musculature of body
11
adipose tissue
9
blood
9
bodily fluid
8
skeleton
7
limb
4
artery
3
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
68
AMP
Genome assembly (visualization)
196
hg19
GRCh38
Lab
40
Karen Mohlke, UNC
15
AMP-T2D consortium
13
Bing Ren, UCSD
assay_title!
ChIP-seq
assembly!
GRCh38
month_released!
August, 2018
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
68 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
20
20
1
3
1
1
1
right lobe of liver
1
1
1
cell line
HepG2
9
2
2
2
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
Download