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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
6
Hi-C
5
RRBS
2
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
6
3D chromatin structure
5
DNA methylation
3
Transcription
2
DNA accessibility
Date released
5
July, 2019
4
August, 2017
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
3
bed bedMethyl
3
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
bigWig
1
txt
Organism
17
Homo sapiens
Biosample type
16
tissue
1
primary cell
Organ
250
pancreas
198
epithelium
136
kidney
106
heart
93
bone element
68
liver
52
eye
40
connective tissue
22
brain
20
lung
18
vasculature
17
blood vessel
17
musculature of body
12
adipose tissue
9
blood
9
bodily fluid
8
skeleton
7
limb
4
artery
3
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
17
AMP
Genome assembly (visualization)
46
hg19
GRCh38
Lab
17
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
ChIP-seq
assembly!
GRCh38
month_released!
October, 2017
target.investigated_as!
histone
BIOSAMPLE
ASSAY
17 results
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Hi-C
RRBS
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
left ventricle myocardium
1
primary cell
skeletal muscle cell
1
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