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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 297ATAC-seq
  • 263single cell RNA-seq
  • 250total RNA-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 58WGBS
  • 57pCHi-C
  • 32Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5DNase-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 517Transcription
  • 391DNA accessibility
  • 80DNA methylation
  • 323D chromatin structure
  • 1DNA sequencing
Target of assay
  • 5control
  • 5nucleotide modification
Date released
  • 200May, 2022
  • 187August, 2021
  • 170February, 2023
  • 144February, 2021
  • 103May, 2020
  • 56September, 2020
  • 48March, 2020
  • 48May, 2021
  • 47September, 2023
  • 41October, 2019
  • 29July, 2019
  • 25February, 2020
  • 19April, 2020
  • 17August, 2017
  • 16January, 2021
  • 10November, 2020
  • 8January, 2018
  • 5December, 2019
  • 4July, 2018
  • 4March, 2023
  • 4October, 2022
  • 3March, 2019
  • 3May, 2023
  • 2November, 2018
  • 2November, 2019
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
  • 1September, 2018
Available data
  • 202fastq
  • 200tsv
  • 161txt
  • 153zippedFastqFolder
  • 103bigWig
  • 79bam
  • 77bed narrowPeak
  • 23bedpe bed3+
  • 22hic
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 15bed bed3+
  • 10bed bed3
  • 10bigBed narrowPeak
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 2bed broadPeak
  • 2ibed
  • 1bedpe
  • 1bigBed broadPeak
  • 1tar
  • 1vcf
Organism
  • 1191Homo sapiens
Biosample type
  • 601tissue
  • 480primary cell
  • 60cell line
  • 51in vitro differentiated cells
  • 7stem cell
Organ
  • 250pancreas
  • 198epithelium
  • 136kidney
  • 106heart
  • 93bone element
  • 68liver
  • 52eye
  • 40connective tissue
  • 22brain
  • 20lung
  • 18vasculature
  • 17blood vessel
  • 17musculature of body
  • 12adipose tissue
  • 9blood
  • 9bodily fluid
  • 8skeleton
  • 7limb
  • 4artery
  • 3vein
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 757AMP
  • 314HPAP
  • 58T1D
  • 47KPMP
  • 19LungMap
  • 4community
Genome assembly (visualization)
  • 1908hg19
  • GRCh38
  • 5hg18
Lab
  • 577AMP-T2D consortium
  • 314Klaus Kaestner, Upenn
  • 93Kyle Gaulton, UCSD
  • 67Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 19Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 145inconsistent ontology term
  • 42audit script error
assay_title!
  • ChIP-seq
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

1199 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
DNase-seq
FAIRE-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
...and 6 more
tissue
kidney64496111
islet of Langerhans4632743141
bone element84
liver201203111
heart left ventricle182111
primary cell
Langerhans cell8548
pancreatic alpha cell2242311
pancreatic beta cell1311161
exocrine cell39
naive thymus-derived CD4-positive, alpha-beta T cell2211
cell line
EndoC_BH118162321
HepG29222
EndoC-BH1
HEK293T2
GM128781
in vitro differentiated cells
embryonic stem cell651
adipocyte811
cardiomyocytes (cardiac muscle cell)222
chondrocyte5
immature adipocyte22
stem cell
SB Ad3.11
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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