Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
6
WGBS
4
total RNA-seq
3
pCHi-C
1
DNase-seq
1
RNA microarray
Assay category
6
DNA methylation
4
Transcription
1
DNA accessibility
Date released
6
August, 2017
2
February, 2020
2
February, 2023
1
August, 2018
1
August, 2021
1
June, 2019
1
March, 2020
1
May, 2021
Available data
4
fastq
3
bam
3
bigWig
3
tsv
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bed narrowPeak
1
bedpe bed3+
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
14
Homo sapiens
Biosample type
10
tissue
3
in vitro differentiated cells
2
primary cell
Organ
210
kidney
209
pancreas
161
epithelium
145
heart
48
blood vessel
48
vasculature
43
liver
39
artery
26
brain
24
eye
20
lung
15
connective tissue
11
adipose tissue
11
musculature of body
8
blood
8
bodily fluid
8
limb
5
bone element
4
skeleton
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
14
AMP
1
T1D
Genome assembly (visualization)
hg19
489
GRCh38
Lab
14
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
assay_title!
ChIP-seq
assembly!
hg19
audit.ERROR.category!
inconsistent ontology term
files.file_type!
hdf5
BIOSAMPLE
ASSAY
15 results
search-icon
table-tab-icon
Clear Filters
WGBS
total RNA-seq
pCHi-C
DNase-seq
RNA microarray
tissue
adipose tissue
3
1
subcutaneous abdominal adipose tissue
3
subcutaneous adipose tissue
1
1
omental fat pad
1
in vitro differentiated cells
adipocyte
1
preadipocyte
1
white fat cell
1
primary cell
adult endothelial progenitor cell
1
cardiac fibroblast
1
Download