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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
174
single cell RNA-seq
138
ATAC-seq
134
total RNA-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
24
pCHi-C
17
DNase-seq
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
308
Transcription
182
DNA accessibility
29
DNA methylation
5
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
228
August, 2021
93
February, 2021
62
February, 2023
47
September, 2023
31
October, 2019
27
May, 2022
25
February, 2020
22
March, 2020
19
April, 2020
17
July, 2019
16
June, 2019
14
May, 2023
12
August, 2017
8
January, 2021
6
November, 2018
4
July, 2018
4
November, 2020
3
December, 2019
2
March, 2019
May, 2021
1
August, 2022
1
October, 2017
Available data
158
tsv
156
txt
115
bed narrowPeak
64
xls
42
bam
34
bigWig
18
fastq
17
bed broadPeak
16
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
16
bigBed broadPeak
16
bigBed narrowPeak
6
csv
1
bedpe bed3+
Organism
640
Homo sapiens
Biosample type
642
tissue
primary cell
39
cell line
13
in vitro differentiated cells
7
stem cell
Organ
200
kidney
144
heart
88
bone element
58
pancreas
47
blood vessel
47
vasculature
39
artery
28
liver
27
brain
24
eye
20
lung
11
musculature of body
10
adipose tissue
10
connective tissue
8
limb
4
skeleton
3
epithelium
3
spleen
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
548
AMP
47
KPMP
28
T1D
19
LungMap
Genome assembly (visualization)
1231
GRCh38
hg19
Lab
375
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
32
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
assay_title!
ChIP-seq
assembly!
hg19
biosample_type!
primary cell
month_released!
May, 2021
BIOSAMPLE
ASSAY
642 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
DNase-seq
Hi-C
MeRIP-seq
snDrop-seq
RRBS
tissue
kidney
64
75
49
6
bone element
84
islet of Langerhans
26
32
7
4
1
4
coronary artery
35
1
liver
1
20
3
1
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