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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ATAC-seq
55
total RNA-seq
47
WGBS
ChIP-seq
8
DNase-seq
6
MeRIP-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
73
DNA accessibility
55
Transcription
47
DNA methylation
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
40
February, 2023
19
September, 2020
16
May, 2021
7
August, 2020
6
February, 2021
6
June, 2019
6
November, 2020
August, 2021
2
October, 2019
1
December, 2019
Available data
80
zippedFastqFolder
69
fastq
16
bigWig
9
tsv
6
bam
6
bed bed3+
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
Organism
182
Homo sapiens
Biosample type
157
primary cell
23
cell line
3
tissue
Organ
229
pancreas
183
epithelium
89
bone element
83
kidney
53
heart
42
blood vessel
42
vasculature
37
artery
31
liver
27
brain
24
eye
20
lung
17
connective tissue
11
musculature of body
10
adipose tissue
8
blood
8
bodily fluid
8
limb
4
skeleton
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
HPAP
34
AMP
Genome assembly (visualization)
hg19
197
GRCh38
Lab
149
Klaus Kaestner, Upenn
28
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
22
inconsistent ontology term
1
audit script error
assay_title!
ChIP-seq
assembly!
hg19
month_released!
August, 2021
BIOSAMPLE
ASSAY
183 results
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ATAC-seq
total RNA-seq
WGBS
DNase-seq
MeRIP-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
29
42
31
pancreatic beta cell
16
11
16
pancreatic acinar cell
4
kidney tubule cell
3
glomerular visceral epithelial cell
2
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cell line
EndoC_BH1
16
6
1
tissue
pigmented layer of retina
2
renal glomerulus
1
See all biosamples
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