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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
82
ATAC-seq
51
WGBS
ChIP-seq
11
snATAC-seq
10
MeRIP-seq
5
pCHi-C
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
95
DNA accessibility
92
Transcription
51
DNA methylation
1
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
86
May, 2022
60
February, 2023
22
October, 2019
19
September, 2020
17
May, 2021
10
November, 2020
8
January, 2021
7
August, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2018
3
March, 2020
2
February, 2020
2
June, 2019
2
March, 2019
1
August, 2022
Available data
80
fastq
80
zippedFastqFolder
16
bigWig
14
tsv
13
bam
6
txt
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
256
Homo sapiens
Biosample type
149
primary cell
83
tissue
25
cell line
Organ
233
pancreas
212
kidney
185
epithelium
145
heart
89
bone element
48
blood vessel
48
vasculature
43
liver
39
artery
27
brain
24
eye
20
lung
18
connective tissue
11
adipose tissue
11
musculature of body
8
blood
8
bodily fluid
8
limb
4
skeleton
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
HPAP
80
AMP
28
T1D
Genome assembly (visualization)
hg19
480
GRCh38
Lab
149
Klaus Kaestner, Upenn
61
AMP-T2D consortium
33
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
24
inconsistent ontology term
1
audit script error
assay_title!
ChIP-seq
assembly!
hg19
month_released!
October, 2018
BIOSAMPLE
ASSAY
257 results
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Clear Filters
total RNA-seq
ATAC-seq
WGBS
snATAC-seq
MeRIP-seq
pCHi-C
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
primary cell
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
pancreatic acinar cell
4
tissue
islet of Langerhans
32
17
7
4
4
1
pancreas
1
2
4
1
body of pancreas
1
2
2
retina
3
pigmented layer of retina
2
cell line
EndoC_BH1
16
6
2
1
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