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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
324
total RNA-seq
ChIP-seq
80
single cell RNA-seq
59
ATAC-seq
8
DNase-seq
4
WGBS
2
small RNA-seq
1
Hi-C
Assay category
406
Transcription
67
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Date released
153
July, 2018
93
August, 2017
40
May, 2021
40
November, 2019
40
September, 2018
39
April, 2018
26
February, 2021
7
August, 2020
6
November, 2018
5
October, 2017
5
September, 2017
4
July, 2019
4
June, 2019
3
August, 2018
3
March, 2020
3
September, 2020
2
March, 2019
2
October, 2018
2
October, 2019
1
June, 2018
Available data
464
bam
456
bigWig
406
tsv
238
fastq
54
bed narrowPeak
30
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
7
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
1
hdf5
Organism
478
Homo sapiens
Biosample type
308
tissue
134
primary cell
36
cell line
Organ
491
connective tissue
478
pancreas
406
adipose tissue
197
epithelium
171
liver
166
kidney
153
heart
116
vasculature
114
blood vessel
103
artery
66
bone element
49
limb
46
brain
40
musculature of body
18
ureter
14
embryo
8
skeleton
7
nerve
4
eye
4
spleen
2
vein
1
pericardium
Project
466
AMP
10
HPAP
2
T1D
Genome assembly (visualization)
495
hg19
478
GRCh38
Lab
465
AMP-T2D consortium
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
39
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
ChIP-seq
organ_slims!
blood
BIOSAMPLE
ASSAY
478 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
tissue
islet of Langerhans
260
6
22
1
body of pancreas
2
4
4
2
2
pancreas
1
2
2
primary cell
pancreatic alpha cell
10
12
13
pancreatic beta cell
10
12
10
pancreatic acinar cell
4
12
5
pancreatic ductal cell
4
10
4
pancreatic delta cell
11
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cell line
EndoC_BH1
33
1
Panc1
1
1
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