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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1277total RNA-seq
  • ChIP-seq
  • 234ATAC-seq
  • 207DNase-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 2Hi-C
Assay category
  • 1401Transcription
  • 441DNA accessibility
  • 17DNA methylation
  • 23D chromatin structure
Target of assay
  • 3control
Date released
  • 563February, 2021
  • 188May, 2020
  • 187June, 2019
  • 186May, 2021
  • 164July, 2018
  • 98August, 2017
  • 89August, 2021
  • 79July, 2019
  • 49April, 2018
  • 46November, 2019
  • 40September, 2018
  • 35February, 2023
  • 31October, 2019
  • 16November, 2018
  • 15February, 2018
  • 13March, 2020
  • 12May, 2023
  • 8October, 2017
  • 7August, 2020
  • 6November, 2020
  • 5December, 2019
  • 5January, 2019
  • 5September, 2017
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 2October, 2018
  • 1March, 2023
Available data
  • 1735bam
  • 1676bigWig
  • 1400tsv
  • 415bed narrowPeak
  • 299fastq
  • 231bigBed narrowPeak
  • 206bed broadPeak
  • 205bed bed3+
  • 205bigBed broadPeak
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
Organism
  • 1861Homo sapiens
Biosample type
  • 1269tissue
  • 329primary cell
  • 145in vitro differentiated cells
  • 118cell line
Organ
  • 491connective tissue
  • 478pancreas
  • 406adipose tissue
  • 197epithelium
  • 171liver
  • 166kidney
  • 153heart
  • 116vasculature
  • 114blood vessel
  • 103artery
  • 66bone element
  • 49limb
  • 46brain
  • 40musculature of body
  • 18ureter
  • 14embryo
  • 8skeleton
  • 7nerve
  • 4eye
  • 4spleen
  • 2vein
  • 1pericardium
Project
  • 1752AMP
  • 98T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 1908hg19
  • 1861GRCh38
  • 5hg18
Lab
  • 1676AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 149inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

1861 results

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Clear Filters
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue3822
islet of Langerhans2602216
liver14721
kidney7513
bone tissue58
primary cell
monocyte5313
pancreatic alpha cell101312
pancreatic beta cell101012
pancreatic acinar cell4512
pancreatic ductal cell4410
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)191
neural progenitor cell710
induced pluripotent stem cell9
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
cell line
smooth muscle cell of the coronary artery528
EndoC_BH1331
H1-hESC8
HepG2511
Panc111
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