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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
159
total RNA-seq
23
ATAC-seq
5
DNase-seq
3
Hi-C
3
small RNA-seq
2
RRBS
1
pCHi-C
Assay category
162
Transcription
28
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Date released
143
May, 2020
20
May, 2022
9
July, 2019
5
December, 2019
5
January, 2019
3
November, 2018
2
August, 2017
2
February, 2021
2
June, 2019
2
March, 2020
2
October, 2019
1
August, 2021
Available data
189
bigWig
170
bam
162
tsv
28
bed narrowPeak
10
fastq
7
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
hdf5
Organism
196
Homo sapiens
Biosample type
178
tissue
10
primary cell
8
cell line
Organ
513
connective tissue
452
pancreas
407
adipose tissue
196
liver
166
epithelium
114
heart
90
kidney
85
vasculature
82
blood vessel
70
bone element
68
artery
48
limb
45
musculature of body
41
brain
32
eye
18
ureter
14
embryo
12
skeleton
7
nerve
4
vein
2
pericardium
2
spleen
1
blood
1
bodily fluid
Project
196
AMP
Genome assembly (visualization)
196
hg19
171
GRCh38
Lab
175
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_title!
ChIP-seq
audit.ERROR.category!
audit script error
month_released!
September, 2018
BIOSAMPLE
ASSAY
196 results
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total RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
RRBS
pCHi-C
tissue
liver
147
20
2
1
1
1
right lobe of liver
2
1
1
2
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
cell line
HepG2
5
1
1
1
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