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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
total RNA-seq
ChIP-seq
42
ATAC-seq
4
Hi-C
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
126
Transcription
43
DNA accessibility
4
3D chromatin structure
Date released
83
May, 2021
26
February, 2021
21
August, 2021
15
February, 2018
12
February, 2023
8
October, 2019
6
March, 2020
5
November, 2019
1
August, 2017
Available data
144
bam
139
bigWig
126
tsv
22
bed narrowPeak
16
fastq
7
bed bedgraph
6
bed bed3+
6
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
177
Homo sapiens
Biosample type
775
tissue
372
primary cell
177
in vitro differentiated cells
63
cell line
Organ
25
connective tissue
6
embryo
2
epithelium
heart
Project
177
AMP
Genome assembly (visualization)
177
hg19
144
GRCh38
4
hg18
Lab
165
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
103
inconsistent ontology term
assay_title!
ChIP-seq
organ_slims!
adipose tissue
heart
BIOSAMPLE
ASSAY
177 results
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total RNA-seq
ATAC-seq
Hi-C
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
10
adipocyte
4
8
1
1
induced pluripotent stem cell
9
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