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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
ChIP-seq
152
DNase-seq
122
ATAC-seq
16
small RNA-seq
11
Hi-C
9
RRBS
6
single cell RNA-seq
3
FAIRE-seq
1
snATAC-seq
Assay category
918
Transcription
278
DNA accessibility
11
3D chromatin structure
9
DNA methylation
Date released
452
February, 2021
147
June, 2019
143
May, 2020
116
July, 2018
96
August, 2017
60
July, 2019
40
November, 2019
39
May, 2022
38
May, 2021
33
February, 2023
16
March, 2020
16
October, 2019
November, 2018
7
October, 2017
6
April, 2018
3
March, 2019
2
January, 2018
1
August, 2021
1
May, 2023
Available data
1133
bam
1113
bigWig
918
tsv
264
bed narrowPeak
158
bigBed narrowPeak
152
bed bed3+
152
bed broadPeak
151
bigBed broadPeak
129
fastq
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
txt
Organism
1216
Homo sapiens
Biosample type
1216
tissue
381
primary cell
178
in vitro differentiated cells
123
cell line
Organ
462
connective tissue
404
adipose tissue
326
pancreas
175
liver
72
kidney
70
bone element
48
limb
46
heart
42
musculature of body
30
eye
27
brain
18
ureter
13
blood vessel
13
vasculature
12
epithelium
12
skeleton
7
nerve
6
artery
1
pericardium
1
spleen
Project
1216
AMP
Genome assembly (visualization)
1254
GRCh38
1216
hg19
Lab
1173
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
1
audit script error
assay_title!
ChIP-seq
month_released!
November, 2017
November, 2018
BIOSAMPLE
ASSAY
1216 results
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total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
3
islet of Langerhans
260
1
42
2
1
6
1
liver
147
20
1
1
1
bone tissue
58
heart
4
16
1
1
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