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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
98
total RNA-seq
23
ATAC-seq
Assay category
98
Transcription
23
DNA accessibility
Date released
58
May, 2021
45
May, 2020
18
May, 2022
Available data
114
bam
103
bigWig
96
tsv
18
bed narrowPeak
18
fastq
2
bed bed3+
Organism
121
Homo sapiens
Biosample type
98
primary cell
18
tissue
5
in vitro differentiated cells
Organ
18
pancreas
Project
96
T1D
25
AMP
Genome assembly (visualization)
121
hg19
96
GRCh38
Lab
1751
AMP-T2D consortium
121
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
7
Struan F.A. Grant, CHOP
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
0
Xin Sun, UCSD
Audit category:
4
inconsistent ontology term
assay_title!
ChIP-seq
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
121 results
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total RNA-seq
ATAC-seq
primary cell
monocyte
53
CD8-positive, alpha-beta T cell
4
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
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tissue
islet of Langerhans
18
in vitro differentiated cells
embryonic stem cell
5
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