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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 1279total RNA-seq
  • 261ATAC-seq
  • 186DNase-seq
  • 106single cell RNA-seq
  • 27Hi-C
  • 19RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 4pCHi-C
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 1403Transcription
  • 453DNA accessibility
  • 273D chromatin structure
  • 19DNA methylation
Target of assay
  • 3control
Date released
  • 569February, 2021
  • 233May, 2020
  • 193May, 2021
  • 164July, 2018
  • 164June, 2019
  • 103August, 2017
  • 91July, 2019
  • 49April, 2018
  • 48November, 2019
  • 45February, 2023
  • 40September, 2018
  • 39May, 2022
  • 39October, 2019
  • 31August, 2021
  • 29March, 2020
  • 15February, 2018
  • 10November, 2018
  • 7October, 2017
  • 6November, 2020
  • 5December, 2019
  • 5January, 2019
  • 5September, 2017
  • 3August, 2018
  • 3January, 2018
  • 3June, 2018
  • 3March, 2019
  • 3October, 2022
  • 2October, 2018
  • 1May, 2023
Available data
  • 1764bam
  • 1722bigWig
  • 1402tsv
  • 370bed narrowPeak
  • 304fastq
  • 218bigBed narrowPeak
  • 197bed bed3+
  • 184bed broadPeak
  • 183bigBed broadPeak
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
Organism
  • 1908Homo sapiens
Biosample type
  • 1226tissue
  • 381primary cell
  • 178in vitro differentiated cells
  • 123cell line
Organ
  • 513connective tissue
  • 495pancreas
  • 407adipose tissue
  • 210epithelium
  • 196liver
  • 114heart
  • 90kidney
  • 86vasculature
  • 83blood vessel
  • 70bone element
  • 68artery
  • 48limb
  • 46musculature of body
  • 41brain
  • 32eye
  • 18ureter
  • 14embryo
  • 12skeleton
  • 7nerve
  • 5vein
  • 2pericardium
  • 2spleen
  • 1blood
  • 1bodily fluid
Project
  • 1807AMP
  • 98T1D
  • 3HPAP
Genome assembly (visualization)
  • 1908hg19
  • 1861GRCh38
  • 5hg18
Lab
  • 1751AMP-T2D consortium
  • 121Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 7Struan F.A. Grant, CHOP
  • 3Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 167inconsistent ontology term
  • 5audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

1908 results

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Clear Filters
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
Capture-C
snATAC-seq
tissue
adipose tissue3823
islet of Langerhans2604216211
liver147202111
bone tissue58
heart41611
primary cell
monocyte5315
pancreatic beta cell107121
pancreatic alpha cell106121
pancreatic acinar cell45121
pancreatic ductal cell4410
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)1911
neural progenitor cell710
adipocyte4811
induced pluripotent stem cell9
cell line
smooth muscle cell of the coronary artery528
EndoC_BH13331
H1-hESC8
HepG25111
Panc111
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