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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
187
single cell RNA-seq
161
ATAC-seq
ChIP-seq
47
WGBS
29
snATAC-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
192
DNA accessibility
58
DNA methylation
6
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
72
May, 2021
59
September, 2020
48
July, 2018
43
April, 2018
31
July, 2019
27
September, 2018
20
February, 2021
8
January, 2021
7
August, 2020
5
December, 2019
4
November, 2020
4
October, 2019
3
August, 2018
3
June, 2018
2
October, 2018
1
August, 2017
1
March, 2020
1
March, 2023
1
November, 2018
Available data
367
bam
366
bigWig
288
fastq
270
tsv
153
zippedFastqFolder
bed narrowPeak
52
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
709
Homo sapiens
Biosample type
1472
tissue
709
primary cell
172
in vitro differentiated cells
164
cell line
5
stem cell
Organ
270
epithelium
251
pancreas
19
connective tissue
11
kidney
8
blood
8
bodily fluid
7
brain
7
liver
6
vasculature
5
blood vessel
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
1
vein
Project
294
AMP
294
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
315
hg19
263
GRCh38
Lab
294
Klaus Kaestner, Upenn
292
AMP-T2D consortium
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
audit script error
24
inconsistent ontology term
assay_title!
ChIP-seq
audit.ERROR.category!
audit script error
files.file_type!
bed narrowPeak
lab.title!
Anna Gloyn, Oxford
BIOSAMPLE
ASSAY
709 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
12
29
31
Langerhans cell
85
21
pancreatic beta cell
21
12
16
16
monocyte
54
2
1
1
exocrine cell
39
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