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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
243
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
47
WGBS
29
snATAC-seq
28
DNase-seq
17
pCHi-C
9
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
432
Transcription
258
DNA accessibility
57
DNA methylation
6
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
85
May, 2021
59
September, 2020
48
July, 2018
43
April, 2018
41
September, 2018
26
July, 2019
21
February, 2021
21
June, 2019
9
October, 2019
8
January, 2021
7
August, 2020
6
August, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
360
bam
359
bigWig
288
fastq
266
tsv
153
zippedFastqFolder
66
bed narrowPeak
49
bigBed narrowPeak
31
bed bed3+
25
bed broadPeak
25
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
770
Homo sapiens
Biosample type
1671
tissue
770
primary cell
193
in vitro differentiated cells
118
cell line
7
stem cell
Organ
310
epithelium
273
pancreas
27
connective tissue
21
kidney
13
vasculature
12
brain
10
blood vessel
10
liver
8
blood
8
bodily fluid
heart
4
musculature of body
4
vein
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
355
AMP
294
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
370
hg19
322
GRCh38
Lab
353
AMP-T2D consortium
294
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
audit script error
27
inconsistent ontology term
assay_title!
ChIP-seq
audit.ERROR.category!
audit script error
organ_slims!
heart
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
770 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
31
Langerhans cell
85
21
pancreatic beta cell
21
23
12
16
monocyte
54
15
1
1
exocrine cell
39
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