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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
95
total RNA-seq
71
ATAC-seq
69
single cell RNA-seq
47
WGBS
18
DNase-seq
7
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
Assay category
164
Transcription
90
DNA accessibility
47
DNA methylation
7
3D chromatin structure
Date released
80
May, 2022
40
September, 2018
38
February, 2023
33
April, 2018
32
July, 2018
19
September, 2020
13
June, 2019
10
October, 2019
7
August, 2020
7
July, 2019
6
February, 2021
5
December, 2019
5
September, 2017
3
August, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
1
May, 2021
Available data
184
fastq
162
bigWig
150
bam
117
tsv
80
zippedFastqFolder
39
bed narrowPeak
39
bigBed narrowPeak
17
bed bed3+
15
bed broadPeak
15
bigBed broadPeak
bed bedMethyl
5
bigBed bedMethyl
5
hic
4
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
308
Homo sapiens
Biosample type
305
primary cell
tissue
3
cell line
1
in vitro differentiated cells
Organ
309
epithelium
274
pancreas
72
vasculature
71
blood vessel
67
heart
62
artery
51
connective tissue
30
liver
21
kidney
13
embryo
11
brain
9
blood
9
bodily fluid
5
vein
3
adipose tissue
3
musculature of body
1
bone element
1
bone marrow
1
eye
1
mammary gland
1
pericardium
Project
157
AMP
152
HPAP
Genome assembly (visualization)
159
GRCh38
151
hg19
Lab
157
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
4
audit script error
assay_title!
ChIP-seq
audit.ERROR.category!
inconsistent ontology term
biosample_type!
tissue
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
309 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
31
1
pancreatic beta cell
21
23
12
16
1
pancreatic acinar cell
4
9
11
1
pancreatic ductal cell
4
4
10
pancreatic delta cell
11
+ See 18 more…
cell line
glomerular visceral epithelial cell
1
1
EndoC_BH1
1
in vitro differentiated cells
endothelial cell
1
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