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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
DNase-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
24
Transcription
7
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
3
control
Date released
June, 2019
18
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
2
October, 2019
1
February, 2023
1
October, 2017
Available data
26
tsv
20
bigWig
17
bam
5
bed bed3+
3
bed narrowPeak
3
bigBed narrowPeak
3
fastq
3
hdf5
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bed bed3
Organism
38
Homo sapiens
Biosample type
31
tissue
7
primary cell
Organ
723
pancreas
525
connective tissue
417
adipose tissue
381
epithelium
237
liver
229
heart
224
kidney
159
bone element
127
vasculature
126
blood vessel
105
artery
52
eye
38
brain
24
limb
24
musculature of body
20
lung
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
21
hg19
16
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ChIP-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bedpe
month_released!
June, 2019
BIOSAMPLE
ASSAY
38 results
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total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
DNase-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
1
1
2
1
frontal cortex
2
1
1
cerebellum (Hemisphere)
1
1
1
Ammon's horn
1
1
cerebellum
2
+ See 13 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 1 more…
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