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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
115
total RNA-seq
34
ATAC-seq
17
pCHi-C
10
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
115
Transcription
44
DNA accessibility
Date released
81
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
8
January, 2021
Available data
120
bam
103
bigWig
96
tsv
24
fastq
18
bed narrowPeak
6
txt
2
bed bed3+
Organism
181
Homo sapiens
Biosample type
114
primary cell
52
tissue
10
in vitro differentiated cells
5
cell line
Organ
51
pancreas
8
blood
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
144
T1D
37
AMP
Genome assembly (visualization)
121
hg19
96
GRCh38
Lab
2246
AMP-T2D consortium
324
Klaus Kaestner, Upenn
181
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
20
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
assay_title!
ChIP-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
November, 2020
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
181 results
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Clear Filters
total RNA-seq
ATAC-seq
pCHi-C
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
1
B cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 30 more…
tissue
islet of Langerhans
11
29
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
5
cell line
EndoC_BH1
3
2
See all biosamples
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