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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
ChIP-seq
187
single cell RNA-seq
178
ATAC-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
236
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
85
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
31
July, 2019
27
September, 2018
8
January, 2021
7
August, 2020
7
October, 2019
5
December, 2019
5
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
August, 2017
1
March, 2020
1
March, 2023
1
November, 2018
Available data
367
bam
366
bigWig
315
fastq
270
tsv
153
zippedFastqFolder
69
bed narrowPeak
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
757
Homo sapiens
Biosample type
1686
tissue
757
primary cell
193
in vitro differentiated cells
176
cell line
7
stem cell
Organ
275
epithelium
254
pancreas
21
connective tissue
11
kidney
8
blood
8
bodily fluid
8
liver
7
brain
7
vasculature
6
blood vessel
5
heart
3
musculature of body
2
adipose tissue
2
artery
2
vein
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
324
HPAP
312
AMP
120
T1D
1
ITG
Genome assembly (visualization)
336
hg19
280
GRCh38
Lab
324
Klaus Kaestner, Upenn
310
AMP-T2D consortium
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
26
inconsistent ontology term
assay_title!
ChIP-seq
audit.WARNING.category!
inconsistent control read length
files.file_type!
bigBed narrowPeak
month_released!
December, 2017
BIOSAMPLE
ASSAY
757 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
29
31
1
monocyte
54
15
1
1
pancreatic beta cell
21
12
16
16
1
exocrine cell
39
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