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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 197total RNA-seq
  • 141single cell RNA-seq
  • ChIP-seq
  • 76snATAC-seq
  • 60ATAC-seq
  • 47WGBS
  • 17pCHi-C
  • 4Hi-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 342Transcription
  • 136DNA accessibility
  • 47DNA methylation
  • 43D chromatin structure
Date released
  • 134May, 2022
  • 99February, 2023
  • 68May, 2021
  • 59September, 2020
  • 47September, 2023
  • 45February, 2021
  • 45May, 2020
  • 19April, 2020
  • 16January, 2021
  • 7August, 2020
  • 5March, 2023
  • 4March, 2020
  • 3October, 2022
Available data
  • 169fastq
  • 153zippedFastqFolder
  • 108bigWig
  • 104tsv
  • 98bam
  • 4hic
  • 3bedpe bed3+
  • 3cool
Organism
  • 546Homo sapiens
Biosample type
  • 445primary cell
  • 95tissue
  • 9cell line
  • 2stem cell
Organ
  • 182pancreas
  • 154epithelium
  • 47kidney
  • 19lung
  • 8blood
  • 8bodily fluid
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • AMP
  • 324HPAP
  • 156T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 109GRCh38
  • 101hg19
Lab
  • 324Klaus Kaestner, Upenn
  • 152Kyle Gaulton, UCSD
  • 47KPMP
  • 19Xin Sun, UCSD
  • 4AMP-T2D consortium
  • 4Anna Gloyn, Oxford
  • 1ITG
Audit category:
  • 30audit script error
  • 7inconsistent ontology term
assay_title!
  • ChIP-seq
award.project!
  • AMP
BIOSAMPLE
ASSAY

551 results

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Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell8548
pancreatic alpha cell4229311
monocyte531
pancreatic beta cell1116161
exocrine cell39
tissue
kidney47
islet of Langerhans7611
lung910
pancreas4
thymus1
cell line
EndoC_BH1232
EndoC-BH111
stem cell
SB Ad3.111
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