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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
344
total RNA-seq
ChIP-seq
103
ATAC-seq
80
single cell RNA-seq
11
snATAC-seq
10
MeRIP-seq
6
Hi-C
4
WGBS
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
pCHi-C
Assay category
426
Transcription
117
DNA accessibility
6
3D chromatin structure
6
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
157
July, 2018
94
August, 2017
57
May, 2021
42
November, 2019
40
September, 2018
39
April, 2018
26
February, 2021
24
May, 2022
19
February, 2023
11
March, 2020
10
November, 2020
8
January, 2021
6
July, 2019
5
March, 2019
5
November, 2018
5
October, 2017
5
September, 2017
4
August, 2021
4
October, 2019
3
August, 2018
2
October, 2018
1
August, 2022
1
February, 2020
1
June, 2018
Available data
491
bam
452
bigWig
411
tsv
255
fastq
74
bed narrowPeak
32
bigBed narrowPeak
9
bed broadPeak
8
bed bed3+
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
hdf5
Organism
568
Homo sapiens
Biosample type
382
tissue
124
primary cell
63
cell line
Organ
569
pancreas
522
connective tissue
416
adipose tissue
234
liver
229
heart
227
epithelium
224
kidney
159
bone element
123
vasculature
122
blood vessel
103
artery
52
eye
36
brain
24
musculature of body
20
limb
20
lung
16
skeleton
15
embryo
9
blood
9
bodily fluid
6
nerve
4
spleen
3
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
539
AMP
HPAP
30
T1D
Genome assembly (visualization)
487
hg19
461
GRCh38
Lab
500
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
66
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
assay_title!
ChIP-seq
award.project!
HPAP
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
569 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
MeRIP-seq
Hi-C
WGBS
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
pCHi-C
tissue
islet of Langerhans
278
58
6
7
4
3
1
1
1
pancreas
2
4
1
2
1
1
1
body of pancreas
3
4
2
2
primary cell
pancreatic beta cell
10
7
12
pancreatic alpha cell
10
6
12
pancreatic acinar cell
4
5
12
pancreatic ductal cell
4
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
33
19
6
1
2
1
Panc1
1
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