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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1016
total RNA-seq
ChIP-seq
211
ATAC-seq
174
single cell RNA-seq
173
DNase-seq
87
RNA microarray
25
WGBS
23
pCHi-C
18
snATAC-seq
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1206
Transcription
406
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
223
August, 2021
160
June, 2019
143
May, 2020
120
July, 2018
108
August, 2017
70
July, 2019
66
May, 2022
47
September, 2023
44
October, 2019
42
February, 2023
40
November, 2019
39
May, 2021
33
March, 2020
21
February, 2020
19
April, 2020
16
November, 2018
15
May, 2023
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1171
bam
1144
bigWig
1061
tsv
346
bed narrowPeak
179
bigBed narrowPeak
173
bed broadPeak
172
bed bed3+
171
bigBed broadPeak
157
fastq
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1778
Homo sapiens
Biosample type
1780
tissue
675
primary cell
196
in vitro differentiated cells
111
cell line
7
stem cell
Organ
473
connective tissue
415
adipose tissue
360
pancreas
272
kidney
206
liver
190
heart
158
bone element
60
blood vessel
vasculature
56
brain
56
limb
54
eye
53
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1714
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
1221
GRCh38
1213
hg19
Lab
1495
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
25
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
9
audit script error
assay_title!
ChIP-seq
award.project!
T1D
organ_slims!
spinal cord
vasculature
BIOSAMPLE
ASSAY
1780 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
3
1
islet of Langerhans
285
57
6
1
4
1
3
1
1
4
kidney
49
75
64
13
6
1
1
1
liver
167
20
1
2
3
1
1
1
1
bone element
84
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