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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
74
total RNA-seq
70
single cell RNA-seq
24
ATAC-seq
17
DNase-seq
6
RRBS
1
FAIRE-seq
Assay category
144
Transcription
42
DNA accessibility
6
DNA methylation
Date released
40
September, 2018
33
April, 2018
33
July, 2018
26
February, 2021
14
June, 2019
11
July, 2019
8
October, 2019
6
May, 2021
5
December, 2019
5
September, 2017
3
August, 2017
3
August, 2018
2
November, 2019
2
October, 2018
1
June, 2018
Available data
198
bigWig
186
bam
185
fastq
154
tsv
80
zippedFastqFolder
54
bed narrowPeak
40
bigBed narrowPeak
18
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
192
Homo sapiens
Biosample type
156
primary cell
34
cell line
2
in vitro differentiated cells
Organ
492
connective tissue
491
pancreas
405
adipose tissue
192
epithelium
173
liver
120
heart
96
kidney
84
vasculature
81
blood vessel
68
artery
66
bone element
49
brain
49
limb
43
musculature of body
18
ureter
14
embryo
8
skeleton
7
nerve
5
eye
4
spleen
3
vein
2
pericardium
Project
192
AMP
T1D
Genome assembly (visualization)
186
hg19
185
GRCh38
Lab
192
AMP-T2D consortium
Audit category:
37
inconsistent ontology term
assay_title!
ChIP-seq
award.project!
T1D
BIOSAMPLE
ASSAY
192 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
primary cell
pancreatic beta cell
10
12
7
pancreatic alpha cell
10
12
6
pancreatic acinar cell
4
12
5
pancreatic ductal cell
4
10
4
pancreatic delta cell
11
+ See 18 more…
cell line
EndoC_BH1
31
1
glomerular visceral epithelial cell
1
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
See all biosamples
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