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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
151
ATAC-seq
102
single cell RNA-seq
57
total RNA-seq
25
DNase-seq
9
RRBS
2
Hi-C
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
176
DNA accessibility
161
Transcription
10
DNA methylation
2
3D chromatin structure
Target of assay
3
control
Date released
102
May, 2020
48
July, 2018
43
April, 2018
41
September, 2018
26
July, 2019
20
June, 2019
18
May, 2021
12
February, 2023
6
August, 2017
6
November, 2020
6
October, 2019
5
December, 2019
5
September, 2017
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
November, 2018
Available data
262
bam
249
bigWig
166
tsv
146
fastq
62
bed narrowPeak
45
bigBed narrowPeak
26
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
Organism
350
Homo sapiens
Biosample type
1715
tissue
350
primary cell
196
in vitro differentiated cells
109
cell line
5
stem cell
Organ
162
epithelium
124
pancreas
26
connective tissue
21
kidney
vasculature
12
brain
11
blood vessel
10
liver
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
350
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
269
hg19
214
GRCh38
Lab
348
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
23
inconsistent ontology term
assay_title!
ChIP-seq
month_released!
April, 2020
organ_slims!
vasculature
BIOSAMPLE
ASSAY
350 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic beta cell
7
12
10
pancreatic alpha cell
6
12
10
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
pancreatic acinar cell
5
12
4
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