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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 1468total RNA-seq
  • 449ATAC-seq
  • 358single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 78snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 30Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 1848Transcription
  • 744DNA accessibility
  • 97DNA methylation
  • 303D chromatin structure
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • 707February, 2021
  • 291May, 2020
  • 234May, 2021
  • 202February, 2023
  • 200May, 2022
  • 187June, 2019
  • 168July, 2018
  • 126August, 2021
  • 115August, 2017
  • 108July, 2019
  • 72October, 2019
  • 61March, 2020
  • 59September, 2020
  • 49April, 2018
  • 48November, 2019
  • 47September, 2023
  • 41September, 2018
  • 25February, 2020
  • 19April, 2020
  • 18November, 2018
  • 16January, 2021
  • 16November, 2020
  • 15February, 2018
  • 10December, 2019
  • 8January, 2018
  • 7August, 2020
  • 7October, 2017
  • 5January, 2019
  • 5March, 2023
  • 5September, 2017
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 3March, 2019
  • 2October, 2018
  • 1August, 2022
  • 1December, 2018
  • 1May, 2023
Available data
  • 1814bam
  • 1773bigWig
  • 1590tsv
  • 500fastq
  • 424bed narrowPeak
  • 241bigBed narrowPeak
  • 218bed bed3+
  • 207bed broadPeak
  • 206bigBed broadPeak
  • 153zippedFastqFolder
  • 101txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 21bedpe bed3+
  • 20hic
  • 12bed bed3
  • 8csv
  • 5hdf5
  • 4bed bedgraph
  • 3cool
  • 2ibed
  • 1tar
Organism
  • 2882Homo sapiens
Biosample type
  • 1723tissue
  • 809primary cell
  • 189in vitro differentiated cells
  • 162cell line
  • 7stem cell
Organ
  • 723pancreas
  • 527connective tissue
  • 418adipose tissue
  • 395epithelium
  • 259heart
  • 226liver
  • 159bone element
  • 158kidney
  • 134vasculature
  • 131blood vessel
  • 107artery
  • 68brain
  • 57musculature of body
  • 56eye
  • 56limb
  • 20lung
  • 18ureter
  • 16skeleton
  • 15embryo
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2339AMP
  • 324HPAP
  • 156T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1896hg19
  • 1784GRCh38
  • 5hg18
Lab
  • 2253AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 189Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
Audit category:
  • 292inconsistent ontology term
  • 42audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
award.rfa!
  • AMP2
BIOSAMPLE
ASSAY

2890 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
Capture-C
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
...and 5 more
tissue
adipose tissue382331
islet of Langerhans2916661741141
liver167201231111
bone element84
kidney531311
primary cell
Langerhans cell8548
pancreatic alpha cell523512311
pancreatic beta cell212312161
monocyte54151
exocrine cell39
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)1911
neural progenitor cell710
adipocyte571
embryonic stem cell751
cell line
EndoC_BH13319163221
smooth muscle cell of the coronary artery528
HepG251121
H1-hESC8
EndoC-BH1
stem cell
SB Ad3.11
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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