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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 1271total RNA-seq
  • 389ATAC-seq
  • 217single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 40pCHi-C
  • 28WGBS
  • 26Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
Assay category
  • 1506Transcription
  • 608DNA accessibility
  • 50DNA methylation
  • 263D chromatin structure
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • 662February, 2021
  • 246May, 2020
  • 187June, 2019
  • 168July, 2018
  • 166May, 2021
  • 126August, 2021
  • 115August, 2017
  • 108July, 2019
  • 103February, 2023
  • 72October, 2019
  • 66May, 2022
  • 57March, 2020
  • 49April, 2018
  • 48November, 2019
  • 41September, 2018
  • 25February, 2020
  • 18November, 2018
  • 16November, 2020
  • 15February, 2018
  • 10December, 2019
  • 8January, 2018
  • 7October, 2017
  • 5January, 2019
  • 5September, 2017
  • 4August, 2018
  • 3June, 2018
  • 3March, 2019
  • 2October, 2018
  • 1August, 2022
  • 1December, 2018
  • 1May, 2023
  • 1October, 2022
Available data
  • 1716bam
  • 1665bigWig
  • 1486tsv
  • 424bed narrowPeak
  • 331fastq
  • 241bigBed narrowPeak
  • 218bed bed3+
  • 207bed broadPeak
  • 206bigBed broadPeak
  • 101txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 18bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 5hdf5
  • 4bed bedgraph
  • 2ibed
  • 1tar
Organism
  • 2336Homo sapiens
Biosample type
  • 1628tissue
  • 364primary cell
  • 189in vitro differentiated cells
  • 153cell line
  • 5stem cell
Organ
  • 541pancreas
  • 526connective tissue
  • 418adipose tissue
  • 259heart
  • 241epithelium
  • 226liver
  • 158bone element
  • 134vasculature
  • 131blood vessel
  • 111kidney
  • 107artery
  • 68brain
  • 57musculature of body
  • 56eye
  • 56limb
  • 18ureter
  • 16skeleton
  • 15embryo
  • 8nerve
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 1adrenal gland
  • 1blood
  • 1bodily fluid
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 2339AMP
Genome assembly (visualization)
  • 1795hg19
  • 1675GRCh38
  • 5hg18
Lab
  • 2249AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 37Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 285inconsistent ontology term
  • 12audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

2339 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
snDrop-seq
Capture-C
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
tissue
adipose tissue382313
islet of Langerhans2845561411411
liver167201213111
bone element84
bone tissue58
primary cell
pancreatic beta cell10712
pancreatic alpha cell10612
naive thymus-derived CD4-positive, alpha-beta T cell122
CD4-positive, alpha-beta memory T cell22
pancreatic acinar cell4512
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)1911
neural progenitor cell710
adipocyte571
embryonic stem cell751
cell line
EndoC_BH131191621
smooth muscle cell of the coronary artery528
HepG251211
H1-hESC8
Panc111
stem cell
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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