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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 82ATAC-seq
  • 59total RNA-seq
  • ChIP-seq
  • 11single cell RNA-seq
  • 6snATAC-seq
  • 5STARR-seq
  • 4Hi-C
  • 2Capture-C
  • 1whole genome sequencing assay
Assay category
  • 88DNA accessibility
  • 70Transcription
  • 43D chromatin structure
  • 1DNA sequencing
Date released
  • 150August, 2021
  • 14May, 2023
  • 3February, 2023
  • 2March, 2019
  • 1October, 2017
Available data
  • 68bed narrowPeak
  • 64xls
  • 60txt
  • 10tsv
  • 6bigWig
  • 3bed bedgraph
  • 3hic
  • 2bed bed3+
  • 2bedpe bed3+
  • 1bed broadPeak
  • 1bedpe
  • 1fastq
  • 1vcf
Organism
  • 170Homo sapiens
Biosample type
  • 147tissue
  • 16cell line
  • 7in vitro differentiated cells
Organ
  • 144kidney
  • 13liver
  • 5pancreas
  • 4connective tissue
Project
  • 170AMP
Genome assembly (visualization)
  • 77GRCh38
  • 12hg19
Lab
  • 142Katalin Susztak, Upenn
  • 20Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 2inconsistent ontology term
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

170 results

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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney75491161
islet of Langerhans212
cell line
HepG29211
HEK293T2
Synthesized DNA1
in vitro differentiated cells
adipocyte11
osteoblast11
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
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