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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
426
total RNA-seq
ChIP-seq
145
ATAC-seq
84
RNA microarray
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
7
DNase-seq
7
Hi-C
4
MeRIP-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
2
small RNA-seq
Assay category
508
Transcription
165
DNA accessibility
53
DNA methylation
7
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
157
July, 2018
156
February, 2021
104
May, 2022
94
August, 2017
63
February, 2023
40
September, 2018
39
April, 2018
39
November, 2019
38
May, 2021
19
September, 2020
8
January, 2021
7
August, 2020
7
March, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
5
September, 2017
4
June, 2019
4
November, 2020
3
August, 2018
3
October, 2019
3
October, 2022
2
August, 2021
2
October, 2018
1
August, 2022
1
February, 2020
1
June, 2018
Available data
522
bam
483
bigWig
441
tsv
324
fastq
94
txt
80
bed narrowPeak
80
zippedFastqFolder
31
bigBed narrowPeak
8
bed broadPeak
6
bed bed3+
6
bed bedMethyl
6
bedpe bed3+
6
bigBed bedMethyl
6
bigBed broadPeak
6
hic
4
bed bed3
3
cool
1
bedpe
Organism
823
Homo sapiens
Biosample type
546
tissue
277
primary cell
cell line
Organ
664
pancreas
531
connective tissue
418
adipose tissue
331
epithelium
293
kidney
216
liver
199
heart
159
bone element
74
vasculature
71
blood vessel
68
brain
57
musculature of body
56
eye
56
limb
47
artery
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
8
nerve
7
embryo
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
642
AMP
152
HPAP
29
T1D
Genome assembly (visualization)
526
hg19
508
GRCh38
Lab
607
AMP-T2D consortium
152
Klaus Kaestner, Upenn
52
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
4
audit script error
assay_title!
ChIP-seq
biosample_type!
cell line
BIOSAMPLE
ASSAY
823 results
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total RNA-seq
ATAC-seq
RNA microarray
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
FAIRE-seq
RRBS
pCHi-C
small RNA-seq
tissue
islet of Langerhans
278
58
6
7
1
3
4
1
1
bone element
84
bone tissue
58
body of pancreas
3
4
2
4
2
pancreas
2
2
4
2
1
1
1
1
+ See 12 more…
primary cell
pancreatic alpha cell
52
35
12
31
1
pancreatic beta cell
21
23
12
16
1
pancreatic acinar cell
4
9
12
1
pancreatic ductal cell
4
4
10
pancreatic delta cell
11
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