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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1414total RNA-seq
  • ChIP-seq
  • 502ATAC-seq
  • 369single cell RNA-seq
  • 210DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 74WGBS
  • 51pCHi-C
  • 30Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2Capture-C
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
Assay category
  • 1803Transcription
  • 801DNA accessibility
  • 96DNA methylation
  • 303D chromatin structure
Target of assay
  • 5control
  • 2nucleotide modification
Date released
  • 619February, 2021
  • 290May, 2020
  • 250August, 2021
  • 214May, 2021
  • 200May, 2022
  • 199February, 2023
  • 187June, 2019
  • 168July, 2018
  • 115August, 2017
  • 108July, 2019
  • 65October, 2019
  • 59September, 2020
  • 51March, 2020
  • 49April, 2018
  • 47September, 2023
  • 45November, 2019
  • 41September, 2018
  • 25February, 2020
  • 19April, 2020
  • 17November, 2018
  • 16January, 2021
  • 15February, 2018
  • 15May, 2023
  • 10December, 2019
  • 10November, 2020
  • 8October, 2017
  • 7August, 2020
  • 7January, 2018
  • 5March, 2019
  • 5September, 2017
  • 4August, 2018
  • 3June, 2018
  • 3March, 2023
  • 3October, 2022
  • 2October, 2018
  • 1August, 2022
Available data
  • 1697bam
  • 1668bigWig
  • 1481tsv
  • 494fastq
  • 480bed narrowPeak
  • 239bigBed narrowPeak
  • 217bed bed3+
  • 207bed broadPeak
  • 205bigBed broadPeak
  • 160txt
  • 153zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
Organism
  • 2878Homo sapiens
Biosample type
  • 1870tissue
  • 809primary cell
  • 196in vitro differentiated cells
  • cell line
  • 7stem cell
Organ
  • 664pancreas
  • 531connective tissue
  • 418adipose tissue
  • 331epithelium
  • 293kidney
  • 216liver
  • 199heart
  • 159bone element
  • 74vasculature
  • 71blood vessel
  • 68brain
  • 57musculature of body
  • 56eye
  • 56limb
  • 47artery
  • 20lung
  • 18ureter
  • 16skeleton
  • 8blood
  • 8bodily fluid
  • 8nerve
  • 7embryo
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2340AMP
  • 324HPAP
  • 149T1D
  • 47KPMP
  • 19LungMap
  • 2community
  • 1ITG
Genome assembly (visualization)
  • 1785hg19
  • 1743GRCh38
  • 5hg18
Lab
  • 2104AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 184Kyle Gaulton, UCSD
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 227inconsistent ontology term
  • 42audit script error
assay_title!
  • ChIP-seq
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

2882 results

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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
tissue
adipose tissue382331
islet of Langerhans2926861743114
kidney497564136111
liver167201231111
bone element84
primary cell
Langerhans cell8548
pancreatic alpha cell523512311
pancreatic beta cell212312161
monocyte541511
exocrine cell39
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)1911
neural progenitor cell710
adipocyte5811
embryonic stem cell761
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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