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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
222
total RNA-seq
134
single cell RNA-seq
60
ATAC-seq
27
snATAC-seq
17
WGBS
11
DNase-seq
4
RRBS
2
FAIRE-seq
1
GRO-seq
1
Hi-C
Assay category
356
Transcription
100
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Date released
105
August, 2017
76
February, 2023
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2018
41
September, 2020
24
May, 2022
18
November, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
December, 2018
1
January, 2018
March, 2019
Available data
1668
bam
1635
bigWig
1469
tsv
479
fastq
470
bed narrowPeak
238
bigBed narrowPeak
214
bed bed3+
206
bed broadPeak
205
bigBed broadPeak
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
18
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
3
cool
1
tar
1
vcf
Organism
479
Homo sapiens
Biosample type
315
primary cell
156
tissue
in vitro differentiated cells
7
cell line
1
stem cell
Organ
323
pancreas
185
epithelium
13
liver
9
connective tissue
6
adipose tissue
4
spleen
3
brain
2
musculature of body
Project
310
AMP
169
HPAP
Genome assembly (visualization)
288
hg19
283
GRCh38
1
hg18
Lab
285
AMP-T2D consortium
169
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
27
audit script error
7
inconsistent ontology term
assay_title!
ChIP-seq
biosample_type!
in vitro differentiated cells
month_released!
March, 2019
BIOSAMPLE
ASSAY
479 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
FAIRE-seq
GRO-seq
Hi-C
primary cell
pancreatic alpha cell
52
12
13
6
Langerhans cell
34
27
pancreatic beta cell
21
12
10
exocrine cell
39
pancreatic acinar cell
4
9
5
+ See 14 more…
tissue
islet of Langerhans
97
6
19
1
1
body of pancreas
4
2
2
liver
1
2
1
spleen
1
2
1
adipose tissue
3
+ See 7 more…
cell line
HepG2
5
1
1
stem cell
hESC
1
See all biosamples
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