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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 1391total RNA-seq
  • 489ATAC-seq
  • 367single cell RNA-seq
  • 211DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 52pCHi-C
  • 30Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1GRO-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1780Transcription
  • 789DNA accessibility
  • 97DNA methylation
  • 303D chromatin structure
  • 1DNA sequencing
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • 681February, 2021
  • 291May, 2020
  • 255August, 2021
  • 200May, 2022
  • 189February, 2023
  • 187June, 2019
  • 168July, 2018
  • 145May, 2021
  • 114August, 2017
  • 108July, 2019
  • 64October, 2019
  • 59September, 2020
  • 53March, 2020
  • 49April, 2018
  • 47September, 2023
  • 43November, 2019
  • 41September, 2018
  • 25February, 2020
  • 19April, 2020
  • 18November, 2018
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 8December, 2019
  • 8October, 2017
  • 7August, 2020
  • 5January, 2019
  • 5March, 2019
  • 5March, 2023
  • 5September, 2017
  • 4January, 2018
  • 4October, 2022
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1August, 2022
  • 1December, 2018
Available data
  • 1669bam
  • 1635bigWig
  • 1469tsv
  • 480fastq
  • 470bed narrowPeak
  • 238bigBed narrowPeak
  • 214bed bed3+
  • 207bed broadPeak
  • 205bigBed broadPeak
  • 158txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 19hic
  • 16bedpe bed3+
  • 8csv
  • 7bed bed3
  • 5hdf5
  • 3cool
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 2856Homo sapiens
Biosample type
  • 1870tissue
  • 809primary cell
  • in vitro differentiated cells
  • 178cell line
  • 7stem cell
Organ
  • 728pancreas
  • 501connective tissue
  • 417adipose tissue
  • 393epithelium
  • 302kidney
  • 258heart
  • 239liver
  • 159bone element
  • 134vasculature
  • 131blood vessel
  • 107artery
  • 68brain
  • 57musculature of body
  • 56eye
  • 56limb
  • 20lung
  • 18ureter
  • 16skeleton
  • 9blood
  • 9bodily fluid
  • 8embryo
  • 8nerve
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2313AMP
  • 324HPAP
  • 156T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1730hg19
  • 1716GRCh38
  • 1hg18
Lab
  • 2074AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 179Kyle Gaulton, UCSD
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 20Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 186inconsistent ontology term
  • 40audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

2864 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
Capture-C
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
...and 7 more
tissue
adipose tissue382331
islet of Langerhans2926861743141
kidney497564136111
liver167201231111
bone element84
primary cell
Langerhans cell8548
pancreatic alpha cell523512311
pancreatic beta cell212312161
monocyte54151
exocrine cell39
cell line
EndoC_BH13319163221
smooth muscle cell of the coronary artery528
HepG21411222
H1-hESC8
EndoC-BH1
stem cell
SB Ad3.11
hESC
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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