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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 1280total RNA-seq
  • 331ATAC-seq
  • 182single cell RNA-seq
  • 181DNase-seq
  • 87RNA microarray
  • 40pCHi-C
  • 28WGBS
  • 28snATAC-seq
  • 24Hi-C
  • 16small RNA-seq
  • 11RRBS
  • 10MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 4FAIRE-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1482Transcription
  • 544DNA accessibility
  • 39DNA methylation
  • 243D chromatin structure
  • 1DNA sequencing
Target of assay
  • 5control
  • 5nucleotide modification
Date released
  • 659February, 2021
  • 276August, 2021
  • 163June, 2019
  • 149May, 2021
  • 144May, 2020
  • 120July, 2018
  • 117February, 2023
  • 109August, 2017
  • 77July, 2019
  • 66May, 2022
  • 62October, 2019
  • 60March, 2020
  • 48November, 2019
  • 47September, 2023
  • 25February, 2020
  • 19April, 2020
  • 17November, 2018
  • 15February, 2018
  • 15May, 2023
  • 10November, 2020
  • 8January, 2018
  • 8January, 2021
  • 8October, 2017
  • 6April, 2018
  • 5December, 2019
  • 5January, 2019
  • 5March, 2019
  • 4March, 2023
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
  • 1October, 2022
Available data
  • 1447bam
  • 1413bigWig
  • 1330tsv
  • 423bed narrowPeak
  • 189bigBed narrowPeak
  • 186bed bed3+
  • 186fastq
  • 180bed broadPeak
  • 178bigBed broadPeak
  • 161txt
  • 64xls
  • 26bed bedMethyl
  • 26bigBed bedMethyl
  • 19bedpe bed3+
  • 17hic
  • 11bed bed3
  • 7bed bedgraph
  • 6csv
  • 2ibed
  • 1bedpe
  • 1hdf5
  • 1vcf
Organism
  • 2243Homo sapiens
Biosample type
  • 1870tissue
  • primary cell
  • 196in vitro differentiated cells
  • 178cell line
  • 7stem cell
Organ
  • 504connective tissue
  • 452pancreas
  • 416adipose tissue
  • 281kidney
  • 251heart
  • 229liver
  • 158bone element
  • 120blood vessel
  • 120vasculature
  • 105artery
  • 81epithelium
  • 56brain
  • 56limb
  • 54eye
  • 53musculature of body
  • 20lung
  • 18ureter
  • 16skeleton
  • 15embryo
  • 8nerve
  • 5spleen
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1blood
  • 1bodily fluid
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2145AMP
  • 47KPMP
  • 36T1D
  • 19LungMap
  • 4community
Genome assembly (visualization)
  • 1532GRCh38
  • 1527hg19
  • 5hg18
Lab
  • 1891AMP-T2D consortium
  • 142Katalin Susztak, Upenn
  • 67Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 20Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 265inconsistent ontology term
  • 11audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

2251 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
GRO-seq
STARR-seq
Capture-C
FAIRE-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
CRISPR RNA-seq
...and 6 more
tissue
adipose tissue382313
islet of Langerhans2926861473141
kidney497564136111
liver167201213111
bone element84
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)1911
neural progenitor cell710
adipocyte5811
embryonic stem cell761
cell line
EndoC_BH1331916232
smooth muscle cell of the coronary artery528
HepG21412122
H1-hESC8
EndoC-BH1
stem cell
SB Ad3.11
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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