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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 496total RNA-seq
  • 271ATAC-seq
  • 189single cell RNA-seq
  • 56snATAC-seq
  • 48WGBS
  • 34DNase-seq
  • 32pCHi-C
  • 18Hi-C
  • 10RRBS
  • 6MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 2small RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1FAIRE-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 691Transcription
  • 362DNA accessibility
  • 59DNA methylation
  • 183D chromatin structure
  • 1DNA sequencing
Target of assay
  • 6control
  • 3nucleotide modification
Date released
  • 194May, 2021
  • 162February, 2021
  • 148May, 2020
  • 134May, 2022
  • 110February, 2023
  • 59September, 2020
  • 48July, 2018
  • 47August, 2021
  • 43April, 2018
  • 41September, 2018
  • 31July, 2019
  • 25October, 2019
  • 24June, 2019
  • 23March, 2020
  • 15February, 2018
  • 12November, 2020
  • 8January, 2021
  • 8November, 2019
  • 7August, 2017
  • 7August, 2020
  • 7December, 2019
  • 6January, 2018
  • 5January, 2019
  • 5March, 2023
  • 5September, 2017
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 2November, 2018
  • 2October, 2018
  • 1December, 2018
Available data
  • 629bam
  • 622bigWig
  • 524tsv
  • 344fastq
  • 153zippedFastqFolder
  • 103bed narrowPeak
  • 57bigBed narrowPeak
  • 43bed bed3+
  • 30bed broadPeak
  • 30bigBed broadPeak
  • 13bedpe bed3+
  • 12hic
  • 11bed bedMethyl
  • 11bigBed bedMethyl
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4txt
  • 3cool
  • 2csv
  • 2ibed
  • 1tar
  • 1vcf
Organism
  • 1184Homo sapiens
Biosample type
  • tissue
  • 809primary cell
  • 196in vitro differentiated cells
  • 178cell line
  • 7stem cell
Organ
  • 380epithelium
  • 340pancreas
  • 74vasculature
  • 71blood vessel
  • 69heart
  • 62artery
  • 58connective tissue
  • 33liver
  • 30kidney
  • 15embryo
  • 12brain
  • 9blood
  • 9bodily fluid
  • 5vein
  • 4musculature of body
  • 3adipose tissue
  • 2eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
Project
  • 734AMP
  • 324HPAP
  • 127T1D
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 682hg19
  • 592GRCh38
  • 5hg18
Lab
  • 695AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 137Kyle Gaulton, UCSD
  • 16Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 1ITG
Audit category:
  • 205inconsistent ontology term
  • 33audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

1190 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
MeRIP-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
HiChIP
small RNA-seq
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNAme array
...and 5 more
primary cell
Langerhans cell8548
pancreatic alpha cell523512311
pancreatic beta cell212312161
monocyte541511
exocrine cell39
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)1911
neural progenitor cell710
adipocyte5811
embryonic stem cell761
cell line
EndoC_BH13319162321
smooth muscle cell of the coronary artery528
HepG21411222
H1-hESC8
EndoC-BH1
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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