Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
281
ATAC-seq
180
DNase-seq
106
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
16
Hi-C
16
WGBS
10
MeRIP-seq
6
pCHi-C
5
RRBS
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
491
DNA accessibility
179
Transcription
21
DNA methylation
16
3D chromatin structure
1
DNA sequencing
Target of assay
5
control
5
nucleotide modification
Date released
163
June, 2019
139
August, 2021
103
February, 2021
97
February, 2023
66
May, 2022
47
September, 2023
42
October, 2019
July, 2019
23
November, 2019
19
April, 2020
19
August, 2017
18
May, 2021
17
November, 2018
15
May, 2023
11
March, 2020
10
November, 2020
8
January, 2021
8
October, 2017
5
March, 2019
4
July, 2018
3
January, 2018
2
March, 2023
1
August, 2022
1
December, 2018
1
December, 2019
1
October, 2022
Available data
1238
bam
1205
bigWig
tsv
394
bed narrowPeak
184
bigBed narrowPeak
180
bed bed3+
179
bed broadPeak
177
bigBed broadPeak
164
fastq
158
txt
64
xls
13
hic
12
bed bedMethyl
12
bedpe bed3+
12
bigBed bedMethyl
6
bed bed3
6
csv
1
bedpe
1
hdf5
1
vcf
Organism
817
Homo sapiens
Biosample type
764
tissue
526
primary cell
65
in vitro differentiated cells
59
cell line
3
stem cell
Organ
261
kidney
141
pancreas
100
bone element
74
heart
59
liver
50
blood vessel
50
vasculature
49
eye
48
artery
44
limb
41
epithelium
41
musculature of body
30
brain
19
lung
18
ureter
16
adipose tissue
16
connective tissue
16
skeleton
4
spleen
3
nerve
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
1
thymus
Project
721
AMP
47
KPMP
34
T1D
19
LungMap
2
community
Genome assembly (visualization)
352
GRCh38
313
hg19
Lab
492
AMP-T2D consortium
142
Katalin Susztak, Upenn
57
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
114
inconsistent ontology term
2
audit script error
1
inconsistent replicate
Audit category:
1
inconsistent assembly
assay_title!
ChIP-seq
files.file_type!
tsv
month_released!
July, 2019
BIOSAMPLE
ASSAY
823 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
Hi-C
WGBS
MeRIP-seq
pCHi-C
RRBS
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
FAIRE-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
...and 1 more
tissue
kidney
75
13
49
59
6
1
islet of Langerhans
67
1
31
7
3
4
4
1
bone element
84
liver
20
2
20
1
1
3
1
coronary artery
35
2
+ See 63 more…
cell line
EndoC_BH1
18
1
6
3
2
2
1
HepG2
1
2
1
1
2
smooth muscle cell of the coronary artery
8
EndoC-BH1
1
1
HEK293T
2
+ See 5 more…
See all biosamples
Download