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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
19
ATAC-seq
ChIP-seq
3
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
34
Transcription
20
DNA accessibility
1
3D chromatin structure
Target of assay
control
3
nucleotide modification
Date released
26
February, 2021
20
May, 2021
4
March, 2020
3
November, 2019
3
November, 2020
2
August, 2021
2
October, 2019
1
February, 2023
Available data
37
bigWig
36
bam
35
tsv
2
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
hic
Organism
60
Homo sapiens
Biosample type
314
primary cell
61
cell line
15
tissue
2
in vitro differentiated cells
Organ
61
epithelium
61
pancreas
60
artery
60
blood vessel
60
heart
60
vasculature
23
liver
9
kidney
8
embryo
1
blood
1
bodily fluid
1
mammary gland
Project
59
AMP
2
T1D
Genome assembly (visualization)
39
hg19
36
GRCh38
Lab
58
AMP-T2D consortium
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
58
inconsistent ontology term
assay_title!
ChIP-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
61 results
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total RNA-seq
ATAC-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
33
19
3
2
1
1
glomerular visceral epithelial cell
1
1
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