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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 113total RNA-seq
  • 29ATAC-seq
  • 6MeRIP-seq
  • 6pCHi-C
  • 5STARR-seq
  • 4Hi-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2DNase-seq
  • 2HiChIP
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1MPRA
  • 1WGBS
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 115Transcription
  • 31DNA accessibility
  • 43D chromatin structure
  • 1DNA methylation
  • 1DNA sequencing
Target of assay
  • 3control
  • 3nucleotide modification
Date released
  • 88February, 2021
  • 26August, 2021
  • 20May, 2021
  • 10March, 2020
  • 7October, 2019
  • 6February, 2023
  • 6November, 2020
  • 5January, 2019
  • 3November, 2019
  • 2March, 2023
  • 1December, 2018
  • 1January, 2018
  • 1May, 2020
  • 1November, 2018
  • 1October, 2022
Available data
  • 119tsv
  • 117bam
  • 111bigWig
  • 12bed narrowPeak
  • 7fastq
  • 3bed bed3+
  • 2bedpe bed3+
  • 2bigBed narrowPeak
  • 2hic
  • 1bed bed3
  • 1bed bedMethyl
  • 1bed broadPeak
  • 1bigBed bedMethyl
  • 1bigBed broadPeak
  • 1hdf5
  • 1txt
  • 1vcf
Organism
  • 174Homo sapiens
Biosample type
  • 1870tissue
  • 809primary cell
  • 196in vitro differentiated cells
  • 178cell line
  • 7stem cell
Organ
  • 64epithelium
  • 64pancreas
  • 60artery
  • 60blood vessel
  • 60heart
  • 60vasculature
  • 23liver
  • 9kidney
  • 8embryo
  • 1blood
  • 1bodily fluid
  • 1mammary gland
Project
  • 169AMP
  • 7T1D
  • 2community
Genome assembly (visualization)
  • 123hg19
  • 118GRCh38
Lab
  • 149AMP-T2D consortium
  • 16Bing Ren, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 5Kyle Gaulton, UCSD
  • 2Anna Gloyn, Oxford
Audit category:
  • 67inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

178 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
MeRIP-seq
pCHi-C
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
EndoC_BH13319613221
smooth muscle cell of the coronary artery528
HepG214122211
H1-hESC8
EndoC-BH111
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