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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
total RNA-seq
ChIP-seq
35
ATAC-seq
4
Hi-C
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
Assay category
123
Transcription
35
DNA accessibility
4
3D chromatin structure
Date released
89
May, 2021
22
February, 2021
21
August, 2021
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
2
December, 2019
Available data
145
bam
144
bigWig
131
tsv
22
bed narrowPeak
fastq
bed bedgraph
7
bedpe bed3+
6
bed bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
168
Homo sapiens
Biosample type
1712
tissue
494
primary cell
171
cell line
168
in vitro differentiated cells
6
stem cell
Organ
24
connective tissue
2
embryo
2
epithelium
1
heart
Project
168
AMP
Genome assembly (visualization)
155
hg19
129
GRCh38
Lab
154
AMP-T2D consortium
10
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
107
inconsistent ontology term
2
audit script error
assay_title!
ChIP-seq
files.file_type!
bed bedgraph
fastq
organ_slims!
large intestine
BIOSAMPLE
ASSAY
168 results
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total RNA-seq
ATAC-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
10
embryonic stem cell
5
5
1
adipocyte
5
4
1
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