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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
131
total RNA-seq
37
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
133
Transcription
38
DNA accessibility
Date released
79
May, 2021
26
February, 2021
21
August, 2021
16
February, 2023
15
February, 2018
6
October, 2019
5
November, 2019
4
January, 2018
4
March, 2020
2
December, 2019
1
August, 2017
Available data
145
bam
139
bigWig
131
tsv
22
bed narrowPeak
21
fastq
7
bed bedgraph
bedpe bed3+
6
bed bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
179
Homo sapiens
Biosample type
1808
tissue
683
primary cell
179
in vitro differentiated cells
171
cell line
7
stem cell
Organ
29
connective tissue
7
embryo
2
epithelium
1
heart
Project
179
AMP
Genome assembly (visualization)
167
hg19
145
GRCh38
4
hg18
Lab
172
AMP-T2D consortium
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
102
inconsistent ontology term
2
audit script error
assay_title!
ChIP-seq
files.file_type!
bedpe bed3+
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
179 results
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total RNA-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
neural progenitor cell
7
10
adipocyte
5
8
1
1
induced pluripotent stem cell
9
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