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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
127
total RNA-seq
21
ATAC-seq
2
Capture-C
Assay category
127
Transcription
21
DNA accessibility
Date released
79
May, 2021
22
February, 2021
19
August, 2021
15
February, 2018
5
November, 2019
4
February, 2023
4
October, 2019
2
March, 2020
Available data
145
bam
144
bigWig
131
tsv
22
bed narrowPeak
21
fastq
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
5
bed bed3
4
hic
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
150
Homo sapiens
Biosample type
1003
tissue
321
primary cell
150
in vitro differentiated cells
117
cell line
Organ
11
connective tissue
6
embryo
2
epithelium
1
heart
Project
150
AMP
Genome assembly (visualization)
150
hg19
144
GRCh38
Lab
148
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
96
inconsistent ontology term
assay_title!
ChIP-seq
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
150 results
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total RNA-seq
ATAC-seq
Capture-C
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
neural progenitor cell
7
10
induced pluripotent stem cell
9
adipocyte
4
1
1
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