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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 136total RNA-seq
  • 42ATAC-seq
  • 5pCHi-C
  • 4GRO-seq
  • 4Hi-C
  • 2Capture-C
  • 2single cell RNA-seq
  • 1DNase-seq
Assay category
  • 138Transcription
  • 43DNA accessibility
  • 43D chromatin structure
Date released
  • 89May, 2021
  • 26February, 2021
  • 21August, 2021
  • 16February, 2023
  • 15February, 2018
  • 8March, 2020
  • 8October, 2019
  • 5November, 2019
  • 4January, 2018
  • 2December, 2019
  • 1August, 2017
  • 1August, 2018
Available data
  • 145bam
  • 144bigWig
  • 131tsv
  • 22bed narrowPeak
  • 21fastq
  • 7bed bedgraph
  • 7bedpe bed3+
  • 6bed bed3+
  • 5bed bed3
  • 4hic
  • 3bigBed narrowPeak
  • 3txt
  • 2ibed
  • 1bed broadPeak
  • 1bigBed broadPeak
Organism
  • 196Homo sapiens
Biosample type
  • 1870tissue
  • 809primary cell
  • 196in vitro differentiated cells
  • 178cell line
  • 7stem cell
Organ
  • 30connective tissue
  • 7embryo
  • 2epithelium
  • 1adipose tissue
  • 1heart
Project
  • 196AMP
Genome assembly (visualization)
  • 178hg19
  • 145GRCh38
  • 4hg18
Lab
  • 179AMP-T2D consortium
  • 10Kyle Gaulton, UCSD
  • 7Struan F.A. Grant, CHOP
Audit category:
  • 108inconsistent ontology term
  • 2audit script error
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

196 results

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Clear Filters
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)1911
neural progenitor cell710
adipocyte5811
embryonic stem cell761
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