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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
260
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
85
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
31
July, 2019
8
January, 2021
8
October, 2019
7
August, 2020
5
August, 2017
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
367
bam
366
bigWig
315
fastq
270
tsv
153
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
781
Homo sapiens
Biosample type
1675
tissue
781
primary cell
in vitro differentiated cells
177
cell line
7
stem cell
Organ
298
epithelium
276
pancreas
21
connective tissue
11
kidney
8
blood
8
bodily fluid
8
liver
8
vasculature
7
blood vessel
7
brain
5
heart
3
musculature of body
3
vein
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
336
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
360
hg19
302
GRCh38
Lab
334
AMP-T2D consortium
324
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
26
inconsistent ontology term
assay_title!
ChIP-seq
biosample_type!
in vitro differentiated cells
files.file_type!
bigBed broadPeak
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
781 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
12
31
1
pancreatic beta cell
21
23
12
16
1
monocyte
54
15
1
1
exocrine cell
39
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