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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
7
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
264
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
85
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
31
July, 2019
June, 2019
10
October, 2019
8
January, 2021
7
August, 2020
6
August, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
343
bam
342
bigWig
315
fastq
270
tsv
153
zippedFastqFolder
45
bed narrowPeak
28
bigBed narrowPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
785
Homo sapiens
Biosample type
1705
tissue
785
primary cell
in vitro differentiated cells
178
cell line
7
stem cell
Organ
300
epithelium
276
pancreas
22
connective tissue
11
kidney
10
vasculature
9
blood vessel
8
blood
8
bodily fluid
8
liver
7
brain
5
heart
5
vein
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
340
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
364
hg19
305
GRCh38
Lab
338
AMP-T2D consortium
324
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
26
inconsistent ontology term
assay_title!
ChIP-seq
biosample_type!
in vitro differentiated cells
lab.title!
Mark McCarthy, Oxford
month_released!
June, 2019
BIOSAMPLE
ASSAY
785 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
12
31
1
pancreatic beta cell
21
23
12
16
1
monocyte
54
15
1
1
exocrine cell
39
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