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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1278
total RNA-seq
367
single cell RNA-seq
ChIP-seq
213
ATAC-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
42
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
4
MeRIP-seq
3
DNase-seq
3
snDrop-seq
1
DNAme array
Assay category
1663
Transcription
300
DNA accessibility
96
DNA methylation
26
3D chromatin structure
Target of assay
5
control
2
nucleotide modification
Date released
584
February, 2021
290
May, 2020
168
July, 2018
165
August, 2021
162
May, 2022
120
February, 2023
112
May, 2021
105
August, 2017
101
July, 2019
59
September, 2020
49
April, 2018
47
September, 2023
46
October, 2019
39
March, 2020
27
September, 2018
25
February, 2020
20
November, 2019
19
April, 2020
16
January, 2021
15
May, 2023
8
December, 2019
8
November, 2020
7
August, 2020
7
November, 2018
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
2
October, 2017
2
October, 2018
1
August, 2022
1
March, 2023
Available data
1552
bam
1523
bigWig
1346
tsv
472
fastq
bed narrowPeak
236
bigBed narrowPeak
211
bed bed3+
206
bed broadPeak
204
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tar
Organism
2219
Homo sapiens
Biosample type
1481
tissue
740
primary cell
174
in vitro differentiated cells
166
cell line
7
stem cell
Organ
592
pancreas
486
connective tissue
411
adipose tissue
277
epithelium
189
liver
151
bone element
150
kidney
129
heart
35
brain
25
eye
24
musculature of body
24
vasculature
23
blood vessel
20
lung
12
limb
8
blood
8
bodily fluid
8
skeleton
6
artery
5
nerve
3
spleen
2
intestine
2
pericardium
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1681
AMP
324
HPAP
149
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
1271
hg19
1213
GRCh38
Lab
1564
AMP-T2D consortium
324
Klaus Kaestner, Upenn
156
Kyle Gaulton, UCSD
78
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
111
inconsistent ontology term
40
audit script error
assay_title!
ChIP-seq
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
2221 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
DNase-seq
snDrop-seq
DNAme array
tissue
adipose tissue
382
2
3
1
islet of Langerhans
292
6
31
7
4
3
1
4
liver
167
1
3
1
1
1
1
kidney
49
64
11
6
1
1
bone element
84
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primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
29
31
1
pancreatic beta cell
21
12
16
16
1
monocyte
54
2
1
1
exocrine cell
39
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