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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
231
total RNA-seq
197
ATAC-seq
147
single cell RNA-seq
56
snATAC-seq
47
WGBS
ChIP-seq
31
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
380
Transcription
285
DNA accessibility
58
DNA methylation
6
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
85
May, 2021
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
31
July, 2019
24
June, 2019
10
October, 2019
8
January, 2021
7
August, 2020
6
August, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
March, 2023
1
November, 2018
Available data
367
bam
363
bigWig
274
fastq
270
tsv
134
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
746
Homo sapiens
Biosample type
1860
tissue
746
primary cell
189
in vitro differentiated cells
176
cell line
7
stem cell
Organ
291
epithelium
254
pancreas
27
connective tissue
21
kidney
13
vasculature
12
brain
10
blood vessel
10
liver
8
blood
8
bodily fluid
8
heart
4
musculature of body
4
vein
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
363
AMP
262
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
377
hg19
326
GRCh38
Lab
361
AMP-T2D consortium
262
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
29
inconsistent ontology term
28
audit script error
assay_title!
ChIP-seq
files.file_type!
bedpe bed3+
month_released!
September, 2020
target.investigated_as!
histone
BIOSAMPLE
ASSAY
746 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
37
33
12
31
Langerhans cell
45
48
monocyte
54
15
1
1
pancreatic beta cell
20
22
12
16
exocrine cell
39
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