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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
245
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
22
DNase-seq
17
pCHi-C
9
RRBS
4
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
431
Transcription
278
DNA accessibility
57
DNA methylation
4
3D chromatin structure
Date released
147
May, 2020
134
May, 2022
88
February, 2023
85
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
21
July, 2019
17
June, 2019
8
January, 2021
7
August, 2020
6
August, 2017
6
November, 2020
6
October, 2019
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
352
bam
347
bigWig
315
fastq
265
tsv
153
zippedFastqFolder
59
bed narrowPeak
42
bigBed narrowPeak
21
bed bed3+
19
bed broadPeak
19
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
787
Homo sapiens
Biosample type
1735
tissue
787
primary cell
196
in vitro differentiated cells
118
cell line
7
stem cell
Organ
314
epithelium
276
pancreas
27
connective tissue
21
kidney
vasculature
brain
11
blood vessel
10
liver
8
blood
8
bodily fluid
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
342
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
360
hg19
315
GRCh38
Lab
340
AMP-T2D consortium
324
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
28
inconsistent ontology term
assay_title!
ChIP-seq
month_released!
April, 2020
organ_slims!
brain
vasculature
BIOSAMPLE
ASSAY
787 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
12
31
1
pancreatic beta cell
21
23
12
16
1
monocyte
54
15
1
1
exocrine cell
39
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