Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
ChIP-seq
70
single cell RNA-seq
33
ATAC-seq
18
DNase-seq
7
Hi-C
6
RRBS
6
WGBS
1
FAIRE-seq
Assay category
163
Transcription
52
DNA accessibility
12
DNA methylation
7
3D chromatin structure
Date released
May, 2022
40
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
19
September, 2020
14
June, 2019
13
July, 2019
9
October, 2019
7
August, 2020
6
February, 2021
5
December, 2019
5
September, 2017
3
August, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
185
fastq
161
bigWig
150
bam
116
tsv
40
bed narrowPeak
39
bigBed narrowPeak
18
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
234
Homo sapiens
Biosample type
234
primary cell
64
cell line
15
tissue
2
in vitro differentiated cells
Organ
234
epithelium
196
pancreas
27
connective tissue
21
kidney
14
vasculature
12
brain
11
blood vessel
10
liver
8
blood
8
bodily fluid
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
162
AMP
72
HPAP
Genome assembly (visualization)
159
GRCh38
157
hg19
Lab
162
AMP-T2D consortium
72
Klaus Kaestner, Upenn
Audit category:
4
audit script error
4
inconsistent ontology term
assay_title!
ChIP-seq
month_released!
May, 2022
BIOSAMPLE
ASSAY
234 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
WGBS
FAIRE-seq
primary cell
pancreatic alpha cell
52
12
13
1
6
pancreatic beta cell
21
12
10
1
pancreatic acinar cell
4
12
5
1
pancreatic ductal cell
4
10
4
pancreatic delta cell
11
+ See 19 more…
See all biosamples
Download