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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
12
total RNA-seq
6
DNase-seq
4
single cell RNA-seq
2
ATAC-seq
2
pCHi-C
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
17
Transcription
8
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Date released
10
July, 2019
6
November, 2020
5
June, 2019
3
February, 2021
2
April, 2018
2
July, 2018
1
May, 2021
Available data
26
bam
25
bigWig
17
tsv
8
bed bed3+
8
bed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
6
bigBed narrowPeak
3
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
29
Homo sapiens
Biosample type
663
tissue
60
cell line
30
in vitro differentiated cells
29
primary cell
1
stem cell
Organ
314
epithelium
276
pancreas
27
connective tissue
21
kidney
14
vasculature
12
brain
11
blood vessel
10
liver
8
blood
8
bodily fluid
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
28
AMP
1
T1D
Genome assembly (visualization)
27
hg19
25
GRCh38
Lab
28
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
assay_title!
ChIP-seq
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
29 results
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total RNA-seq
DNase-seq
single cell RNA-seq
ATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
primary cell
osteoblast
5
1
2
1
cardiac fibroblast
3
1
pancreatic stellate cell
4
brain pericyte
1
1
mesenchymal stem cell of adipose
1
1
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