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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 247total RNA-seq
  • 200ATAC-seq
  • 187single cell RNA-seq
  • 56snATAC-seq
  • 47WGBS
  • 31DNase-seq
  • 17pCHi-C
  • 10Hi-C
  • 10RRBS
  • 2small RNA-seq
  • 1DNAme array
  • 1FAIRE-seq
Assay category
  • 436Transcription
  • 288DNA accessibility
  • 58DNA methylation
  • 103D chromatin structure
Target of assay
  • 3control
Date released
  • 147May, 2020
  • 134May, 2022
  • 88February, 2023
  • 85May, 2021
  • 59September, 2020
  • 48February, 2021
  • 48July, 2018
  • 43April, 2018
  • 41September, 2018
  • 31July, 2019
  • 24June, 2019
  • 10October, 2019
  • 8January, 2021
  • 7August, 2020
  • 6August, 2017
  • 6November, 2020
  • 5December, 2019
  • 5September, 2017
  • 3August, 2018
  • 3June, 2018
  • 3October, 2022
  • 2October, 2018
  • 1March, 2020
  • 1March, 2023
  • 1November, 2018
Available data
  • 367bam
  • 366bigWig
  • 315fastq
  • 270tsv
  • 153zippedFastqFolder
  • 69bed narrowPeak
  • 52bigBed narrowPeak
  • 34bed bed3+
  • 28bed broadPeak
  • 28bigBed broadPeak
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 6hic
  • 4bedpe bed3+
  • 4hdf5
  • 3cool
  • 2csv
  • 1bed bed3
  • 1tar
Organism
  • 809Homo sapiens
Biosample type
  • 1870tissue
  • 809primary cell
  • 196in vitro differentiated cells
  • 178cell line
  • 7stem cell
Organ
  • 314epithelium
  • 276pancreas
  • 27connective tissue
  • 21kidney
  • 14vasculature
  • 12brain
  • 11blood vessel
  • 10liver
  • 8blood
  • 8bodily fluid
  • 8heart
  • 5vein
  • 4musculature of body
  • 2adipose tissue
  • 2artery
  • 2eye
  • 1bone element
  • 1bone marrow
  • 1pericardium
Project
  • 364AMP
  • 324HPAP
  • 120T1D
  • 1ITG
Genome assembly (visualization)
  • 381hg19
  • 329GRCh38
Lab
  • 362AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 122Kyle Gaulton, UCSD
  • 1ITG
Audit category:
  • 31audit script error
  • 29inconsistent ontology term
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

809 results

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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell8548
pancreatic alpha cell523512311
pancreatic beta cell212312161
monocyte541511
exocrine cell39
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